| Title | Artist | Time | ||
|---|---|---|---|---|
| 1 | The Impossible Waves | Dario Marianelli | 2:37 | |
| 2 | Kubo Goes to Town | Dario Marianelli | 1:25 | |
| 3 | Story Time | Dario Marianelli | 2:10 | |
| 4 | Ancestors | Dario Marianelli | 2:07 | |
| 5 | Meet the Sisters! | Dario Marianelli | 2:33 | |
| 6 | Origami Birds | Dario Marianelli | 3:25 | |
| 7 | The Giant Skeleton | Dario Marianelli | 3:30 | |
| 8 | The Leafy Galleon | Dario Marianelli | 4:36 | |
| 9 | Above and Below | Dario Marianelli | 3:59 | |
| 10 | The Galleon Restored | Dario Marianelli | 1:06 | |
| 11 | Monkey's Story | Dario Marianelli | 2:57 | |
| 12 | Hanzo's Fortress | Dario Marianelli | 5:45 | |
| 13 | United-Divided | Dario Marianelli | 3:01 | |
| 14 | Showdown with Grandfather | Dario Marianelli | 7:04 | |
| 15 | Rebirth | Dario Marianelli | 1:33 | |
| 16 | While My Guitar Gently Weeps | Regina Spektor | 5:23 |